Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07756.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
EAQ06365.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.490
EAQ06368.1
Glycosyltransferase, group 2 family protein.
 
    0.486
EAQ07754.1
Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.
       0.442
EAQ07755.1
Hypothetical protein; Belongs to the UPF0434 family.
       0.442
EAQ06440.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
    
  0.426
EAQ05641.1
Glycosyltransferase, group 2 family protein; COG0793 Periplasmic protease.
 
    0.422
EAQ07753.1
COG3118 Thioredoxin domain-containing protein.
       0.400
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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