Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
EAQ07760.1FtsK/SpoIIIE family protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (970 aa)    
Predicted Functional Partners:
EAQ07759.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
  
 0.905
EAQ07527.1
Chromosome partitioning protein parB; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
   
 0.846
ftsQ
Cell division septal protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.833
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
   
 0.794
EAQ05309.1
Hypothetical protein; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
    
 
 0.753
EAQ06005.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
    
 
 0.753
EAQ06166.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
    
 
 0.753
EAQ08176.1
Type I secretion target repeat protein.
    
 
 0.753
EAQ05884.1
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
  
 0.724
dnaA
Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
  
 0.693
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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