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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07762.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
EAQ07763.1
Alcohol dehydrogenase, zinc-containing; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
   0.928
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.833
rpsU
COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.707
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.695
EAQ06855.1
Hypothetical protein; COG1192 ATPases involved in chromosome partitioning.
  
     0.676
EAQ05290.1
Putative quinoprotein; COG1520 FOG: WD40-like repeat.
  
     0.642
EAQ07855.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
  
     0.622
EAQ07853.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
 
     0.576
EAQ05548.1
NADH-ubiquinone oxidoreductase family protein.
  
     0.476
EAQ06298.1
Putative thiamine-phosphate pyrophosphorylase; COG0352 Thiamine monophosphate synthase.
  
     0.472
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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