EAQ07822.1 protein (Yoonia vestfoldensis SKA53)

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EAQ07822.1

COG0088 Ribosomal protein L4. (109 aa)

Predicted Functional Partners:

rpoC

0.999

rplC

0.999

rpsJ

0.998

rpsS

0.997

rplV

0.997

rpsQ

0.997

rpsH

0.997

rplR

0.997

rpsE

0.997

rpsB

0.996

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ07822.1	rplC	SKA53_13333	SKA53_13328	COG0088 Ribosomal protein L4.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
EAQ07822.1	rplR	SKA53_13333	SKA53_13421	COG0088 Ribosomal protein L4.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.997
EAQ07822.1	rplV	SKA53_13333	SKA53_13356	COG0088 Ribosomal protein L4.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.997
EAQ07822.1	rpoC	SKA53_13333	SKA53_13278	COG0088 Ribosomal protein L4.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
EAQ07822.1	rpsB	SKA53_13333	SKA53_04723	COG0088 Ribosomal protein L4.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.996
EAQ07822.1	rpsE	SKA53_13333	SKA53_13426	COG0088 Ribosomal protein L4.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.997
EAQ07822.1	rpsH	SKA53_13333	SKA53_13411	COG0088 Ribosomal protein L4.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.997
EAQ07822.1	rpsJ	SKA53_13333	SKA53_13323	COG0088 Ribosomal protein L4.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
EAQ07822.1	rpsQ	SKA53_13333	SKA53_13386	COG0088 Ribosomal protein L4.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
EAQ07822.1	rpsS	SKA53_13333	SKA53_13351	COG0088 Ribosomal protein L4.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997
rplC	EAQ07822.1	SKA53_13328	SKA53_13333	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0088 Ribosomal protein L4.	0.999
rplC	rplR	SKA53_13328	SKA53_13421	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.997
rplC	rplV	SKA53_13328	SKA53_13356	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.997
rplC	rpoC	SKA53_13328	SKA53_13278	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
rplC	rpsB	SKA53_13328	SKA53_04723	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.993
rplC	rpsE	SKA53_13328	SKA53_13426	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.995
rplC	rpsH	SKA53_13328	SKA53_13411	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.995
rplC	rpsJ	SKA53_13328	SKA53_13323	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplC	rpsQ	SKA53_13328	SKA53_13386	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.996
rplC	rpsS	SKA53_13328	SKA53_13351	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.996