Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06576.1TRAP-T family transporter, DctM (12 TMs) subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (465 aa)    
Predicted Functional Partners:
EAQ06578.1
TRAP-T family transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.986
EAQ06577.1
TRAP-T family transporter, small (4 TMs) inner membrane subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.923
EAQ06575.1
COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
 
     0.900
EAQ06574.1
Hypothetical protein.
       0.773
EAQ06995.1
Hypothetical extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.732
EAQ06525.1
Bacterial extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.731
EAQ06570.1
Hypothetical protein; COG1145 Ferredoxin.
  
    0.483
yidC
Putative inner membrane protein translocase component YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
       0.473
EAQ06569.1
Hypothetical protein; COG2062 Phosphohistidine phosphatase SixA.
       0.456
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
       0.456
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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