Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06606.1ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component. (307 aa)    
Predicted Functional Partners:
EAQ06607.1
COG0842 ABC-type multidrug transport system, permease component.
 
 0.983
EAQ07950.1
COG0842 ABC-type multidrug transport system, permease component.
 
 0.923
EAQ07862.1
Capsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family; COG3524 Capsule polysaccharide export protein.
    
  0.732
EAQ07861.1
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
     
  0.727
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.723
atpD
ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.706
EAQ06608.1
Peptidase, family S49; COG0616 Periplasmic serine proteases (ClpP class).
  
    0.642
EAQ06609.1
Short chain dehydrogenase.
       0.622
EAQ06610.1
Oxidoreductase, short chain dehydrogenase/reductase family; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
   
   0.607
EAQ06605.1
Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
   0.530
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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