STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06608.1Peptidase, family S49; COG0616 Periplasmic serine proteases (ClpP class). (263 aa)    
Predicted Functional Partners:
EAQ06609.1
Short chain dehydrogenase.
       0.855
EAQ06610.1
Oxidoreductase, short chain dehydrogenase/reductase family; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.771
EAQ06607.1
COG0842 ABC-type multidrug transport system, permease component.
       0.689
EAQ06606.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
  
    0.654
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.504
EAQ07568.1
Hypothetical protein.
   
    0.493
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.440
EAQ06605.1
Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.422
EAQ06737.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
      
 0.406
EAQ06949.1
Arabinose 5-phosphate isomerase; COG0517 FOG: CBS domain.
      
 0.400
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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