STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06631.1Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
EAQ07301.1
Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.578
EAQ06630.1
COG2199 FOG: GGDEF domain.
       0.563
EAQ06932.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.540
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
     
 0.536
EAQ06632.1
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
     
 0.467
EAQ06594.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.423
EAQ07320.1
Hypothetical protein; COG3926 putative secretion activating protein.
  
     0.413
EAQ07321.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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