Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06637.1CAAX amino terminal protease family protein; COG1266 Predicted metal-dependent membrane protease. (301 aa)    
Predicted Functional Partners:
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
    0.748
EAQ06639.1
folC bifunctional protein; COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
       0.695
EAQ06635.1
Dihydroxy-acid dehydratase; COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
       0.665
EAQ06634.1
Hypothetical protein.
       0.630
EAQ06633.1
Hypothetical protein.
       0.600
ilvD
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
       0.568
EAQ07950.1
COG0842 ABC-type multidrug transport system, permease component.
   
  
 0.557
EAQ06607.1
COG0842 ABC-type multidrug transport system, permease component.
   
  
 0.557
EAQ06640.1
Hypothetical protein.
       0.533
EAQ07961.1
Hypothetical protein; COG0778 Nitroreductase.
  
  
 0.530
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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