STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06656.1Ammonium transporter; COG0004 Ammonia permease. (461 aa)    
Predicted Functional Partners:
EAQ05266.1
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 0.998
EAQ06655.1
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.996
EAQ06686.1
COG0347 Nitrogen regulatory protein PII.
  
 0.963
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
 
  
 0.862
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
 
 0.851
EAQ06392.1
Nitrogen regulation protein NtrB; COG3852 Signal transduction histidine kinase, nitrogen specific.
  
 
 0.790
bchL
Light-independent protochlorophyllide reductase iron protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
  
  
 0.698
EAQ06654.1
Glycosyltransferase, family 51; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
       0.626
EAQ07807.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
 
    
 0.604
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.599
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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