Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06660.1Hypothetical protein; COG2217 Cation transport ATPase. (110 aa)    
Predicted Functional Partners:
EAQ06661.1
Hypothetical protein.
       0.787
dapD
COG2171 Tetrahydrodipicolinate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.782
EAQ05891.1
Hypothetical protein; COG5462 Predicted secreted (periplasmic) protein.
  
     0.749
EAQ05850.1
Hypothetical protein.
  
     0.745
EAQ05930.1
Hypothetical protein.
  
     0.737
EAQ06922.1
Hypothetical protein.
  
     0.735
EAQ07021.1
Hypothetical protein.
  
     0.701
EAQ06794.1
ATPase; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.671
ftsQ
Cell division septal protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.659
EAQ07963.1
Hypothetical protein; COG1335 Amidases related to nicotinamidase.
  
     0.650
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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