Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06667.1Hypothetical protein. (176 aa)    
Predicted Functional Partners:
EAQ07100.1
Transcriptional regulator, MarR family; COG1846 Transcriptional regulators.
  
     0.728
rlmN
Radical SAM superfamily protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.676
EAQ06668.1
L-asparaginase, thermolabile family; COG4448 L-asparaginase II.
       0.674
EAQ07157.1
COG4765 Uncharacterized protein conserved in bacteria.
  
     0.647
EAQ07540.1
COG4395 Uncharacterized protein conserved in bacteria.
  
     0.636
EAQ05229.1
Hypothetical protein.
  
     0.616
EAQ05291.1
Hypothetical protein.
  
     0.588
EAQ06835.1
Hypothetical protein.
  
     0.588
EAQ07151.1
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.542
EAQ07453.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.529
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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