Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ06674.1Hypothetical protein; COG4942 Membrane-bound metallopeptidase. (355 aa)    
Predicted Functional Partners:
EAQ06740.1
Cell division permease protein FtsX, putative.
 
 
 
 0.972
EAQ06675.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
  
  
 0.924
EAQ06739.1
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
 
 
 
 0.921
EAQ07284.1
N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase.
 
 
   0.895
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.853
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
     
  0.746
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
     
  0.746
EAQ07958.1
Hypothetical protein; COG0501 Zn-dependent protease with chaperone function.
 
 
   0.726
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
     
  0.716
EAQ06346.1
Methyl-accepting chemotaxis protein McpD; COG2202 FOG: PAS/PAC domain.
     
  0.716
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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