Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06675.1Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (446 aa)    
Predicted Functional Partners:
EAQ06674.1
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
  
  
 0.924
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.836
EAQ05764.1
TPR domain protein; COG0457 FOG: TPR repeat.
    
 
 0.799
EAQ06690.1
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
    
 
 0.753
rsfS
Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
   0.702
rlmH
Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.676
EAQ05922.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
    
 0.674
EAQ05236.1
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
    
 
 0.649
EAQ06641.1
TPR domain protein; COG0457 FOG: TPR repeat.
  
   0.609
EAQ05309.1
Hypothetical protein; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
   
   0.606
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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