Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ06690.1Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (271 aa)    
Predicted Functional Partners:
EAQ06689.1
Cytosol aminopeptidase family protein; COG0260 Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.853
EAQ06740.1
Cell division permease protein FtsX, putative.
 
 
 
 0.787
EAQ06675.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
    
 
 0.753
EAQ05764.1
TPR domain protein; COG0457 FOG: TPR repeat.
    
 
 0.643
EAQ05400.1
Hypothetical protein.
  
     0.589
EAQ06330.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
     0.576
EAQ06693.1
Hypothetical protein.
  
     0.572
EAQ06739.1
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
  
 
 0.557
EAQ06325.1
Hypothetical protein.
  
     0.540
EAQ07423.1
Flagellar biosynthesis protein, FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
   
   0.537
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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