Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06716.1OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (637 aa)    
Predicted Functional Partners:
EAQ06715.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.902
EAQ06231.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
 
 0.859
EAQ06720.1
Hypothetical protein.
 
     0.841
EAQ06714.1
COG2249 putative NADPH-quinone reductase (modulator of drug activity B).
       0.773
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.743
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.730
EAQ05850.1
Hypothetical protein.
  
     0.712
EAQ05891.1
Hypothetical protein; COG5462 Predicted secreted (periplasmic) protein.
  
     0.707
EAQ06499.1
Hypothetical protein.
  
     0.663
EAQ07448.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.656
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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