Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06730.1COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. (265 aa)    
Predicted Functional Partners:
EAQ06731.1
Hypothetical protein; COG1678 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.704
EAQ06737.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.596
EAQ07453.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.592
EAQ07040.1
DNA-binding protein, putative; COG1396 Predicted transcriptional regulators.
  
     0.530
EAQ06896.1
Hypothetical protein.
  
     0.483
EAQ07385.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.471
EAQ06897.1
Hypothetical protein.
  
     0.437
EAQ06898.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
  
     0.427
EAQ07655.1
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
  
     0.424
EAQ07291.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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