Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06738.1COG0810 Periplasmic protein TonB, links inner and outer membranes. (251 aa)    
Predicted Functional Partners:
EAQ06739.1
Cell division ATP-binding protein FtsE; COG2884 Predicted ATPase involved in cell division.
       0.683
EAQ06740.1
Cell division permease protein FtsX, putative.
       0.683
EAQ06741.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.683
EAQ05309.1
Hypothetical protein; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
  
    0.623
EAQ06375.1
Hypothetical protein.
  
     0.584
EAQ07854.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
  
     0.518
EAQ05850.1
Hypothetical protein.
  
     0.504
EAQ07470.1
Hypothetical protein.
  
     0.499
EAQ07321.1
Hypothetical protein.
  
     0.488
EAQ07309.1
Hypothetical protein.
  
     0.485
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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