Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06762.1Transporter, bile acid/Na+ symporter family; COG0385 Predicted Na+-dependent transporter. (293 aa)    
Predicted Functional Partners:
EAQ06761.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.787
EAQ08001.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
  
     0.543
EAQ06589.1
COG2020 putative protein-S-isoprenylcysteine methyltransferase.
  
     0.469
EAQ06760.1
Transcriptional regulatory protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.435
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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