Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06765.1Transcriptional regulator, GntR family; COG1802 Transcriptional regulators. (239 aa)    
Predicted Functional Partners:
EAQ06764.1
Hypothetical protein; COG1451 Predicted metal-dependent hydrolase.
       0.774
EAQ05836.1
Transcriptional regulator, GntR family; COG1802 Transcriptional regulators.
  
     0.768
EAQ05338.1
Putative transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.724
EAQ06763.1
Hypothetical protein.
       0.557
EAQ06211.1
Hypothetical protein.
  
     0.517
EAQ06922.1
Hypothetical protein.
  
     0.501
EAQ06531.1
COG0440 Acetolactate synthase, small (regulatory) subunit.
   
    0.474
EAQ06715.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.418
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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