Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06806.1nifU domain protein; COG0694 Thioredoxin-like proteins and domains. (187 aa)    
Predicted Functional Partners:
EAQ06786.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.907
EAQ06453.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
 
 0.888
EAQ06330.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.861
EAQ06804.1
Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases.
       0.826
EAQ06805.1
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
       0.826
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
 0.819
EAQ07271.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 
 0.788
EAQ06502.1
Iron-sulfur cluster assembly family protein; Belongs to the HesB/IscA family.
 
 
 0.760
EAQ06807.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.705
EAQ07878.1
COG1145 Ferredoxin.
   
  
 0.697
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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