Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06807.1COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (153 aa)    
Predicted Functional Partners:
EAQ06796.1
Hypothetical protein.
 
     0.852
EAQ06797.1
Membrane protein; COG0730 Predicted permeases.
 
     0.847
EAQ06806.1
nifU domain protein; COG0694 Thioredoxin-like proteins and domains.
       0.705
EAQ06804.1
Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases.
       0.687
EAQ06805.1
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
       0.685
EAQ08174.1
Hypothetical protein.
  
     0.620
EAQ06835.1
Hypothetical protein.
  
     0.549
EAQ05291.1
Hypothetical protein.
  
     0.542
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.537
EAQ06808.1
Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase.
       0.472
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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