STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06808.1Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase. (186 aa)    
Predicted Functional Partners:
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.792
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.792
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.757
EAQ05534.1
COG1171 Threonine dehydratase.
     
  0.708
EAQ07663.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
 
 0.667
EAQ07707.1
Probable L-sorbosone dehydrogenase; COG2133 Glucose/sorbosone dehydrogenases.
  
  
  0.642
EAQ06248.1
Tautomerase, putative; COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
    
 0.630
EAQ05314.1
COG2217 Cation transport ATPase.
    
  0.628
EAQ05591.1
Hypothetical protein; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
    
 0.531
EAQ05758.1
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
     
 0.529
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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