STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06808.1Hypothetical protein; COG2514 Predicted ring-cleavage extradiol dioxygenase. (186 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.751
EAQ07663.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
 
 0.653
EAQ07707.1
Probable L-sorbosone dehydrogenase; COG2133 Glucose/sorbosone dehydrogenases.
  
  
  0.642
EAQ06248.1
Tautomerase, putative; COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog.
    
 0.606
EAQ05591.1
Hypothetical protein; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
    
 0.568
EAQ05314.1
COG2217 Cation transport ATPase.
    
  0.551
EAQ06810.1
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
       0.527
EAQ05758.1
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
     
 0.499
EAQ06807.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.485
EAQ05467.1
COG2124 Cytochrome P450.
    
  0.411
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.