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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06810.1Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid). (229 aa)    
Predicted Functional Partners:
tatA
Twin-arginine translocation protein, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.901
EAQ07284.1
N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase.
  
   0.842
EAQ07919.1
Hypothetical protein.
  
     0.768
EAQ06715.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.767
EAQ06211.1
Hypothetical protein.
 
     0.760
EAQ07858.1
Hypothetical protein.
  
     0.754
EAQ06922.1
Hypothetical protein.
  
     0.752
EAQ08125.1
Band 7 protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
   
 0.751
EAQ07062.1
Hypothetical protein.
  
     0.745
EAQ06173.1
Hypothetical protein.
  
     0.739
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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