STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06817.1Competence protein ComM; COG0606 Predicted ATPase with chaperone activity. (504 aa)    
Predicted Functional Partners:
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
 
  
 0.827
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 0.789
EAQ06818.1
Hypothetical protein; COG0625 Glutathione S-transferase.
       0.771
EAQ06819.1
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
       0.706
EAQ06820.1
Possible adenosyl cobinamide kinase/ cobinamide phosphateguanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
       0.699
EAQ07445.1
COG4787 Flagellar basal body rod protein.
   
   0.560
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.553
EAQ07328.1
Competence protein; COG0658 Predicted membrane metal-binding protein.
 
  
 0.535
EAQ07484.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
  
 0.512
EAQ06821.1
COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Belongs to the sigma-70 factor family.
   
   0.501
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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