Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ06817.1Competence protein ComM; COG0606 Predicted ATPase with chaperone activity. (504 aa)    
Predicted Functional Partners:
EAQ07502.1
Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.
 
  
 0.823
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.772
EAQ06818.1
Hypothetical protein; COG0625 Glutathione S-transferase.
       0.768
EAQ06819.1
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
       0.743
EAQ06820.1
Possible adenosyl cobinamide kinase/ cobinamide phosphateguanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
       0.740
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.565
EAQ07328.1
Competence protein; COG0658 Predicted membrane metal-binding protein.
 
  
 0.554
EAQ07445.1
COG4787 Flagellar basal body rod protein.
   
   0.540
EAQ07484.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
  
 0.509
EAQ06822.1
Phosphopantothenoylcysteine synthase/decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.506
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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