STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06834.1D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4). (490 aa)    
Predicted Functional Partners:
EAQ05748.1
COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.871
nadD
Nicotinic acid mononucleotide adenyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.855
EAQ06922.1
Hypothetical protein.
  
     0.630
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.592
EAQ07853.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
  
   
 0.588
EAQ05229.1
Hypothetical protein.
  
     0.553
EAQ05409.1
Putative aldose 1-epimerase protein; COG2017 Galactose mutarotase and related enzymes.
  
    0.543
EAQ06903.1
Hypothetical protein; COG1680 Beta-lactamase class C and other penicillin binding proteins.
    
 0.542
EAQ06498.1
Putative Glycoside hydrolase; COG1472 Beta-glucosidase-related glycosidases.
     
 0.536
EAQ06832.1
Oxidoreductase, aldo/keto reductase family; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
       0.514
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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