Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06835.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.702
EAQ06667.1
Hypothetical protein.
  
     0.588
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.587
EAQ07068.1
Putative heat shock protein DnaJ; COG1076 DnaJ-domain-containing proteins 1.
  
     0.586
EAQ06837.1
Hypothetical protein.
       0.563
EAQ06807.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.549
EAQ07455.1
Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.541
EAQ07100.1
Transcriptional regulator, MarR family; COG1846 Transcriptional regulators.
  
     0.509
EAQ06796.1
Hypothetical protein.
  
     0.502
EAQ05291.1
Hypothetical protein.
  
     0.480
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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