STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06837.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
EAQ06838.1
Hypothetical protein.
 
     0.724
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.676
EAQ07543.1
COG0477 Permeases of the major facilitator superfamily.
  
     0.565
EAQ06835.1
Hypothetical protein.
       0.563
EAQ07748.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.553
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
   
    0.522
EAQ07765.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.479
ureD
Probable urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
     0.465
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.