STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06852.1Hypothetical protein. (320 aa)    
Predicted Functional Partners:
EAQ06851.1
Hypothetical protein.
       0.820
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
       0.718
EAQ05455.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
    
   0.694
EAQ06447.1
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.694
EAQ06854.1
Putative transporter, RhaT family, DMT superfamily; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.669
EAQ06850.1
Hypothetical protein.
       0.527
EAQ06660.1
Hypothetical protein; COG2217 Cation transport ATPase.
  
     0.496
EAQ07245.1
CvpA family protein; COG1286 Uncharacterized membrane protein, required for colicin V production.
  
    0.477
EAQ06922.1
Hypothetical protein.
  
     0.437
EAQ05208.1
Hypothetical protein; COG0366 Glycosidases.
  
 
  0.436
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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