Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ06859.1 | rplM | SKA53_14966 | SKA53_04443 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
| EAQ06859.1 | rplS | SKA53_14966 | SKA53_14971 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
| EAQ06859.1 | rplT | SKA53_14966 | SKA53_10219 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| EAQ06859.1 | rplU | SKA53_14966 | SKA53_04353 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| EAQ06859.1 | rpmB | SKA53_14966 | SKA53_09474 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| EAQ06859.1 | rpmF | SKA53_14966 | SKA53_05348 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.997 |
| EAQ06859.1 | rpsB | SKA53_14966 | SKA53_04723 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.992 |
| EAQ06859.1 | rpsF | SKA53_14966 | SKA53_05775 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.991 |
| EAQ06859.1 | rpsI | SKA53_14966 | SKA53_04448 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
| EAQ06859.1 | rpsP | SKA53_14966 | SKA53_14991 | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
| rplM | EAQ06859.1 | SKA53_04443 | SKA53_14966 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0254 Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.997 |
| rplM | rplS | SKA53_04443 | SKA53_14971 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.998 |
| rplM | rplT | SKA53_04443 | SKA53_10219 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
| rplM | rplU | SKA53_04443 | SKA53_04353 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
| rplM | rpmB | SKA53_04443 | SKA53_09474 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.997 |
| rplM | rpmF | SKA53_04443 | SKA53_05348 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.997 |
| rplM | rpsB | SKA53_04443 | SKA53_04723 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.998 |
| rplM | rpsF | SKA53_04443 | SKA53_05775 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.998 |
| rplM | rpsI | SKA53_04443 | SKA53_04448 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplM | rpsP | SKA53_04443 | SKA53_14991 | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
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