STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
EAQ06869.1Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (290 aa)    
Predicted Functional Partners:
EAQ06870.1
Integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
    0.776
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
 
   
 0.651
EAQ06868.1
Hypothetical protein; COG0004 Ammonia permease.
       0.550
EAQ06760.1
Transcriptional regulatory protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.489
EAQ06866.1
Hypothetical protein; COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
 
     0.468
EAQ06740.1
Cell division permease protein FtsX, putative.
  
     0.463
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.448
EAQ06255.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.405
EAQ06042.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.402
EAQ07986.1
Transcriptional regulators, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.401
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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