Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06891.1Trypsin domain protein; COG5640 Secreted trypsin-like serine protease. (279 aa)    
Predicted Functional Partners:
EAQ06892.1
Glycolate oxidase, iron-sulfur subunit; COG0247 Fe-S oxidoreductase.
       0.806
EAQ06893.1
Glycolate oxidase, GlcE subunit; COG0277 FAD/FMN-containing dehydrogenases.
       0.806
EAQ06890.1
Heat shock protein, Hsp20 family; COG0071 Molecular chaperone (small heat shock protein); Belongs to the small heat shock protein (HSP20) family.
       0.709
EAQ06133.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.627
EAQ06134.1
Lipoprotein, putative; COG0457 FOG: TPR repeat.
  
     0.619
EAQ05929.1
Lipoprotein, putative; COG0419 ATPase involved in DNA repair.
  
     0.601
EAQ05786.1
COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
   
    0.572
EAQ05937.1
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
   
    0.572
EAQ06136.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
  
     0.547
EAQ07109.1
Hypothetical protein.
  
     0.545
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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