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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06897.1Hypothetical protein. (917 aa)    
Predicted Functional Partners:
EAQ06898.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
 
    0.966
EAQ06896.1
Hypothetical protein.
 
     0.925
EAQ06899.1
ATPase, MoxR family; COG0714 MoxR-like ATPases.
 
     0.916
EAQ06901.1
COG3816 Uncharacterized protein conserved in bacteria.
 
     0.820
EAQ06737.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
    0.773
EAQ07358.1
Hypothetical protein; COG1562 Phytoene/squalene synthetase.
 
 
 0.694
EAQ06202.1
Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family).
  
     0.626
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
  
 0.588
EAQ07580.1
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
  
 
 0.573
EAQ05467.1
COG2124 Cytochrome P450.
    
 0.570
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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