Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06942.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
EAQ06940.1
Hypothetical protein; COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
  
 0.963
EAQ06941.1
CbiM protein; COG0310 ABC-type Co2+ transport system, permease component.
 
  
  0.961
EAQ06943.1
Hypothetical protein; COG0260 Leucyl aminopeptidase.
 
   
 0.960
EAQ06939.1
COG1122 ABC-type cobalt transport system, ATPase component.
 
  
 0.944
EAQ06944.1
Hypothetical protein.
       0.506
EAQ06945.1
Hypothetical protein.
       0.506
EAQ06480.1
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
    0.424
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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