STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ33943.1Histidine triad (HIT) protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases. (149 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.844
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.844
EAQ34917.1
Type III restriction enzyme, res subunit; COG1061 DNA or RNA helicases of superfamily II.
    
  0.839
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.837
EAQ37522.1
Helicase-like; COG0514 Superfamily II DNA helicase.
    
  0.837
EAQ33564.1
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
    
  0.763
EAQ37265.1
DEAD/DEAH box helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
 
  0.749
EAQ37549.1
Helicase; COG0513 Superfamily II DNA and RNA helicases.
   
 
  0.749
EAQ34709.1
DEAD/DEAH box helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
 
  0.749
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
  0.658
Your Current Organism:
Nitrobacter sp. Nb311A
NCBI taxonomy Id: 314253
Other names: N. sp. Nb-311A, Nitrobacter sp. Nb 311A, Nitrobacter sp. Nb-311A
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