STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ33433.1Transposase IS3/IS911-family, orfA; COG2801 Transposase and inactivated derivatives. (98 aa)    
Predicted Functional Partners:
EAQ33431.1
COG2801 Transposase and inactivated derivatives.
 
    0.581
EAQ33751.1
COG2801 Transposase and inactivated derivatives.
 
    0.580
EAQ33533.1
COG2801 Transposase and inactivated derivatives.
 
    0.580
EAQ33434.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.458
Your Current Organism:
Nitrobacter sp. Nb311A
NCBI taxonomy Id: 314253
Other names: N. sp. Nb-311A, Nitrobacter sp. Nb 311A, Nitrobacter sp. Nb-311A
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