STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ33628.1Hypothetical protein; COG2856 Predicted Zn peptidase. (289 aa)    
Predicted Functional Partners:
EAQ33625.1
Hypothetical protein.
 
     0.825
EAQ33627.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
    0.780
EAQ33608.1
Hypothetical protein.
  
     0.666
EAQ33404.1
Hypothetical protein.
  
     0.666
EAQ33688.1
Hypothetical protein.
  
     0.665
EAQ33626.1
Prophage LambdaMc01, DNA methyltransferase; COG1475 Predicted transcriptional regulators.
 
     0.639
EAQ34315.1
Helix-turn-helix motif protein; COG1396 Predicted transcriptional regulators.
 
    0.469
EAQ33629.1
COG1484 DNA replication protein.
       0.438
Your Current Organism:
Nitrobacter sp. Nb311A
NCBI taxonomy Id: 314253
Other names: N. sp. Nb-311A, Nitrobacter sp. Nb 311A, Nitrobacter sp. Nb-311A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.