STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ34408.1Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily. (841 aa)    
Predicted Functional Partners:
EAQ34406.1
COG0535 Predicted Fe-S oxidoreductases.
 
   
 0.852
EAQ34405.1
Hypothetical protein; COG0240 Glycerol-3-phosphate dehydrogenase.
 
     0.781
EAQ34404.1
Terpene synthase/Squalene cyclase; COG1657 Squalene cyclase.
 
     0.780
EAQ34403.1
Amine oxidase; COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
  
     0.733
EAQ34402.1
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
 
     0.663
EAQ34337.1
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.616
EAQ34401.1
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
 
     0.489
EAQ35478.1
Possible signal peptide protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.416
EAQ34410.1
COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
   
 0.410
Your Current Organism:
Nitrobacter sp. Nb311A
NCBI taxonomy Id: 314253
Other names: N. sp. Nb-311A, Nitrobacter sp. Nb 311A, Nitrobacter sp. Nb-311A
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