EAP91386.1 protein (Oceanicaulis sp. HTCC2633)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAP91386.1

Hypothetical protein. (169 aa)

Predicted Functional Partners:

EAP89973.1

0.593

EAP91385.1

0.572

EAP88835.1

0.556

EAP91370.1

0.552

EAP89824.1

0.541

EAP90711.1

0.501

EAP91387.1

0.478

EAP91388.1

0.478

EAP91389.1

0.478

EAP90818.1

0.472

Your Current Organism:

Oceanicaulis sp. HTCC2633

NCBI taxonomy Id: 314254
Other names: O. sp. HTCC2633

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAP88835.1	EAP89973.1	OA2633_14970	OA2633_07164	RNA polymerase sigma-70 factor.	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	0.592
EAP88835.1	EAP90818.1	OA2633_14970	OA2633_13975	RNA polymerase sigma-70 factor.	COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.540
EAP88835.1	EAP91386.1	OA2633_14970	OA2633_04391	RNA polymerase sigma-70 factor.	Hypothetical protein.	0.556
EAP89824.1	EAP89973.1	OA2633_06419	OA2633_07164	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	0.769
EAP89824.1	EAP90711.1	OA2633_06419	OA2633_13440	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	Sensory box histidine kinase/response regulator; COG2202 FOG: PAS/PAC domain.	0.470
EAP89824.1	EAP90818.1	OA2633_06419	OA2633_13975	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.413
EAP89824.1	EAP91386.1	OA2633_06419	OA2633_04391	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	Hypothetical protein.	0.541
EAP89973.1	EAP88835.1	OA2633_07164	OA2633_14970	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	RNA polymerase sigma-70 factor.	0.592
EAP89973.1	EAP89824.1	OA2633_07164	OA2633_06419	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	0.769
EAP89973.1	EAP90818.1	OA2633_07164	OA2633_13975	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	COG1629 Outer membrane receptor proteins, mostly Fe transport.	0.704
EAP89973.1	EAP91370.1	OA2633_07164	OA2633_04311	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	Hypothetical protein.	0.577
EAP89973.1	EAP91386.1	OA2633_07164	OA2633_04391	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	Hypothetical protein.	0.593
EAP90711.1	EAP89824.1	OA2633_13440	OA2633_06419	Sensory box histidine kinase/response regulator; COG2202 FOG: PAS/PAC domain.	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	0.470
EAP90711.1	EAP91386.1	OA2633_13440	OA2633_04391	Sensory box histidine kinase/response regulator; COG2202 FOG: PAS/PAC domain.	Hypothetical protein.	0.501
EAP90818.1	EAP88835.1	OA2633_13975	OA2633_14970	COG1629 Outer membrane receptor proteins, mostly Fe transport.	RNA polymerase sigma-70 factor.	0.540
EAP90818.1	EAP89824.1	OA2633_13975	OA2633_06419	COG1629 Outer membrane receptor proteins, mostly Fe transport.	Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.	0.413
EAP90818.1	EAP89973.1	OA2633_13975	OA2633_07164	COG1629 Outer membrane receptor proteins, mostly Fe transport.	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	0.704
EAP90818.1	EAP91386.1	OA2633_13975	OA2633_04391	COG1629 Outer membrane receptor proteins, mostly Fe transport.	Hypothetical protein.	0.472
EAP91370.1	EAP89973.1	OA2633_04311	OA2633_07164	Hypothetical protein.	Hypothetical protein; COG3137 Putative salt-induced outer membrane protein.	0.577
EAP91370.1	EAP91386.1	OA2633_04311	OA2633_04391	Hypothetical protein.	Hypothetical protein.	0.552