STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAP88683.1Transcriptional regulator, putative; COG3712 Fe2+-dicitrate sensor, membrane component. (356 aa)    
Predicted Functional Partners:
EAP88684.1
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
 0.872
EAP88682.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.794
EAP89210.1
TonB-dependent receptor, putative; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.715
EAP89209.1
TonB-dependent receptor, putative; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.707
EAP89738.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.691
EAP91638.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.671
EAP91410.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
  
 0.668
EAP90834.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.665
EAP91412.1
COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.663
EAP90529.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
    0.624
Your Current Organism:
Oceanicaulis sp. HTCC2633
NCBI taxonomy Id: 314254
Other names: O. sp. HTCC2633
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.