STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAP90488.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
EAP90489.1
Hypothetical protein.
       0.773
EAP90511.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
   
 
 0.640
EAP90487.1
Thiol:disulfide interchange protein, putative; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.572
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.503
EAP91097.1
Bifunctional chorismate mutase P/prephenate dehydratase; COG1605 Chorismate mutase.
    
  0.483
EAP90729.1
P-protein (PheA); COG0077 Prephenate dehydratase.
    
  0.483
EAP90485.1
Argininosuccinate lyase.
       0.425
argH
COG0165 Argininosuccinate lyase.
       0.425
EAP90608.1
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.416
ctaA
Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
  
     0.404
Your Current Organism:
Oceanicaulis sp. HTCC2633
NCBI taxonomy Id: 314254
Other names: O. sp. HTCC2633
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