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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50878.1COG2913 Small protein A (tmRNA-binding). (158 aa)    
Predicted Functional Partners:
EAR52248.1
Putative quinoprotein; COG1520 FOG: WD40-like repeat.
  
 
 
 0.972
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.968
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.954
EAR50877.1
Hypothetical protein.
 
     0.793
EAR50879.1
COG3176 Putative hemolysin.
 
     0.783
EAR49968.1
Hypothetical protein.
  
     0.732
EAR50408.1
COG3750 Uncharacterized protein conserved in bacteria.
  
   
 0.721
malE
Periplasmic maltose-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.
    
   0.711
EAR50414.1
Osmotically inducible protein OsmC; COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
  
 0.679
EAR50176.1
COG2927 DNA polymerase III, chi subunit.
  
     0.638
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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