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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52632.1Hypothetical protein; COG0473 Isocitrate/isopropylmalate dehydrogenase. (320 aa)    
Predicted Functional Partners:
EAR52633.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
       0.853
EAR52631.1
Hypothetical protein; COG0073 EMAP domain.
       0.609
EAR49805.1
COG3103 SH3 domain protein.
  
     0.579
EAR50406.1
COG4564 Signal transduction histidine kinase.
  
     0.506
EAR52634.1
COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs.
       0.504
EAR51579.1
DNA-binding protein HU, putative.
  
     0.496
EAR50407.1
DNA-binding response regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.469
EAR53119.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.451
EAR52635.1
COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs.
       0.421
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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