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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52692.1Integral membrane protein; COG3333 Uncharacterized protein conserved in bacteria. (507 aa)    
Predicted Functional Partners:
EAR52694.1
RecA protein; COG3181 Uncharacterized protein conserved in bacteria.
 
    0.958
EAR52698.1
TRAP-T family transporter, DctP (periplasmic binding) subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
    
  0.920
EAR52686.1
COG3181 Uncharacterized protein conserved in bacteria.
 
    0.889
EAR51303.1
COG3181 Uncharacterized protein conserved in bacteria.
 
    0.885
EAR51304.1
TctB protein.
  
 
 0.824
EAR51890.1
COG3181 Uncharacterized protein conserved in bacteria.
 
    0.739
EAR52693.1
Hypothetical protein.
       0.655
EAR52690.1
4-hydroxythreonine-4-phosphate dehydrogenase; COG1995 Pyridoxal phosphate biosynthesis protein; Belongs to the PdxA family.
 
     0.623
EAR52691.1
Tartrate dehydrogenase; COG0473 Isocitrate/isopropylmalate dehydrogenase.
       0.504
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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