close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52696.1TRAP-T family transporter, DctM (12 TMs) subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (435 aa)    
Predicted Functional Partners:
EAR52697.1
TRAP-T family transporter, DctQ (4 TMs) subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.953
EAR52698.1
TRAP-T family transporter, DctP (periplasmic binding) subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.888
EAR53155.1
TRAP dicarboxylate transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.803
EAR52695.1
COG1309 Transcriptional regulator.
 
     0.753
EAR51259.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
    0.740
EAR53156.1
COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.728
EAR50228.1
C4-dicarboxylate-binding periplasmic protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.717
EAR52557.1
TRAP-T family transporter, DctP (periplasmic binding) subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.697
EAR50405.1
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
     0.675
EAR50077.1
TRAP dicarboxylate family transporter, DctQ subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  0.665
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.