Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR52777.1lysM domain protein; COG1652 Uncharacterized protein containing LysM domain. (913 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
  0.778
EAR51076.1
Putative phage tail minor protein.
   
   0.682
EAR52776.1
Hypothetical protein; COG1611 Predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family.
    
  0.677
EAR50366.1
OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
 
  0.614
EAR50853.1
Probable osmotically inducible sensory protein; COG2823 Predicted periplasmic or secreted lipoprotein.
  
  
 0.595
EAR52806.1
Hypothetical protein; COG0655 Multimeric flavodoxin WrbA.
   
    0.575
EAR49567.1
Trp repressor binding protein WrbA, putative; COG0655 Multimeric flavodoxin WrbA.
   
    0.575
EAR52778.1
ABC transporter, ATP-binding/permease protein; COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.
       0.556
EAR49658.1
DNA-binding ferritin-like protein; DNA protection during starvation conditions; COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family.
   
    0.549
EAR52507.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.546
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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