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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52780.1Probable membrane transport protein; COG0477 Permeases of the major facilitator superfamily. (398 aa)    
Predicted Functional Partners:
EAR52781.1
Probable transporter, Major facilitator superfamily protein (MFS); COG0477 Permeases of the major facilitator superfamily.
       0.773
EAR52778.1
ABC transporter, ATP-binding/permease protein; COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.
       0.578
EAR52779.1
Hypothetical protein.
       0.578
EAR51395.1
RNA pseudouridine synthase family protein; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
      0.535
deoD
COG0813 Purine-nucleoside phosphorylase.
 
      0.440
EAR52866.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
      
 0.408
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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