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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCHypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (147 aa)    
Predicted Functional Partners:
EAR51546.1
COG4691 Plasmid stability protein.
       0.805
EAR52072.1
Parallel beta-helix repeat protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.731
EAR52071.1
Type I secretion target repeat protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.696
EAR51224.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
     0.592
EAR51544.1
Hypothetical protein.
       0.584
EAR51543.1
Possible insertion element; COG2801 Transposase and inactivated derivatives.
       0.519
EAR51542.1
Integrase, catalytic domain; COG2801 Transposase and inactivated derivatives.
       0.446
EAR51284.1
Probable ABC transporter permease protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.417
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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