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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52177.1Peptidase, M48 family; COG0501 Zn-dependent protease with chaperone function. (232 aa)    
Predicted Functional Partners:
EAR50848.1
PAS; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
    
 0.859
EAR50849.1
COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
    
 0.809
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.779
EAR50625.1
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
   
   0.762
EAR51016.1
PAS sensor Signal Tranduction Histidine Kinase; COG2202 FOG: PAS/PAC domain.
     
 0.724
EAR51642.1
COG0236 Acyl carrier protein.
  
     0.658
EAR52485.1
Hypothetical protein.
  
     0.628
EAR52631.1
Hypothetical protein; COG0073 EMAP domain.
  
     0.616
EAR49604.1
Hypothetical protein.
  
     0.612
EAR50013.1
Hypothetical protein.
  
     0.599
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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