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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR52227.1Possible LuxR family protein; COG2771 DNA-binding HTH domain-containing proteins. (161 aa)    
Predicted Functional Partners:
EAR52229.1
Putative autoinducer synthase protein; COG3916 N-acyl-L-homoserine lactone synthetase.
 
 
 0.980
EAR51776.1
Hypothetical protein.
  
 
 0.883
EAR51560.1
Two-component sensor histidine kinase; COG2203 FOG: GAF domain.
     
 0.876
EAR52228.1
Transcriptional regulator, LuxR family protein; COG2771 DNA-binding HTH domain-containing proteins.
 
0.855
EAR51276.1
Probable transcriptional regulator; COG3629 DNA-binding transcriptional activator of the SARP family.
   
 
 0.845
EAR50821.1
Hypothetical protein.
  
     0.701
EAR52372.1
Nineteen domain light and oxygen sensing his kinase; COG0642 Signal transduction histidine kinase.
  
 0.660
EAR51372.1
GumP protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 
   0.635
EAR50407.1
DNA-binding response regulator, LuxR family protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
 0.622
EAR52373.1
Response regulator; COG0784 FOG: CheY-like receiver.
  
 0.622
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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